PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5519_p2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 219aa    MW: 25142.5 Da    PI: 8.2024
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5519_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.95.7e-06108133732
                 HHHHHHHHHHHHHHHHHHCTSCCC.. CS
         HLH   7 erErrRRdriNsafeeLrellPkask 32 
                 ++Err R+++N+++  Lr+++Pk+sk
  RrC5519_p2 108 MAERRKRKKLNDRLYMLRSVVPKSSK 133
                 79*********************753 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-699134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.06E-499135No hitNo description
Gene3DG3DSA:4.10.280.106.2E-6108136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MQRRMAEAQF SVAKDVEDND EKHKPSSQAL GYYIASQISP TPQAVDNYKL IIPMGFPREQ  60
AKKDNFVRFQ GGITSRSDEL NESNMGLRVF KMEEENVRRR ECLLKNLMAE RRKRKKLNDR  120
LYMLRSVVPK SSKSHNEFRL SDAPVSIRFA DGTASEELTD SGNSIPTEMF RFHSFDQLPI  180
DNYQQYQGHE ILLDRIKAVL SDTVGYAGMI CELIPSQSP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197115RRRECLLKNLMAERRKRKK
2109116ERRKRKKL
3111115RKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN8493735e-38JN849373.1 Isatis tinctoria cultivar Songlan 1 inducer of CBF expression 1 protein (ICE1) mRNA, complete cds.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.48e-13bHLH family protein